James D. Kelly, Ph.D.
Publications:
Recent Publications: In print:
- Alladassi, B.M.E., S.T. Nkalubo, C. Mukankusi, H.N. Kayaga, P. Gibson, R. Edema, C.A. Urrea, J.D. Kelly, and P.R. Rubaihayo. 2018. Identification of common bean genotypes with dual leaf and pod resistance to common bacterial blight disease in Uganda. African Crop Science Journal 26:63-77.
- Cappa, C., J. D. Kelly, and P. K.W. Ng. 2018. Seed characteristics and physicochemical properties of powders of 25 edible dry bean varieties. Food Chemistry 253:305–313. doi.org/10.1016/j.foodchem.2018.01.048
- Kelly, J.D., G.V. Varner, P. N. Miklas, K. A. Cichy and E.M. Wright. 2018. Registration of ‘Cayenne’ small red bean. J. Plant Regist. 12:194–198: doi:10.3198/jpr2017.05.0033crc
- Kelly, J.D., G.V. Varner, M.I. Chilvers, K. A. Cichy and E.M. Wright. 2018. Registration of ‘Red Cedar’ dark red kidney bean. J. Plant Regist. 12:199–202 doi:10.3198/jpr2017.05.0034crc
- Mendoza, F.A., K.A. Cichy, C. Sprague, A. Goffnett, R. Lu, and J.D. Kelly. 2018. Prediction of canned black bean texture (Phaseolus vulgaris L.) from intact dry seeds using visible/near-infrared spectroscopy and hyperspectral imaging data. J. Sci. Food Agric. 98: 283–290. doi: 10.1002/jsfa.8469
- Wang, W., J.L. Jacobs, M.I. Chilvers, C. M. Mukankusi, J.D. Kelly, and K.A. Cichy. 2018. QTL analysis of Fusarium root rot resistance in an Andean x Middle American RIL population. Crop Sci. 58:1166–1180. doi:10.2135/cropsci2017.10.0608
- Ai, Y., Y. Jin, J. D. Kelly, and P. K.W. Ng. 2017. Composition, functional properties, starch digestibility, and cookie-baking performance of dry bean powders from 25 Michigan-grown varieties. Cereal Chemistry 94:400-408. doi: 10.1094/cchem-04-16-0089-r
- Alladassi, B.M.E., S.T. Nkalubo, C. Mukankusi, E. S. Mwale, P. Gibson, R. Edema, C.A. Urrea, J. D. Kelly, and P. R. Rubaihayo. 2017. Inheritance of resistance to common bacterial blight in four selected common bean (Phaseolus vulgaris L.) genotypes. J. Plant Breed. Crop Sci. 9:71-78. doi: 10.5897/JPBCS2017.0644
- Heilig, J.A. J. S. Beaver, E. M. Wright, Q. Song, and J. D. Kelly. 2017. QTL analysis of symbiotic nitrogen fixation in a black bean population. Crop Sci. 57: 118-129. doi:10.2135/cropsci2016.05.0348
- Heilig, J.A., E.M. Wright, and J.D. Kelly. 2017. Symbiotic N fixation of black and navy beans under organic production systems. Agron. J.109:1-8. doi: 10.2134/agronj2017.01.0051
- Kamfwa, K., D. Zhao, J. D. Kelly and K. A. Cichy. 2017. Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation. PLoS ONE 12(2):e0172141. doi:10.1371/journal.pone.0172141
- McClean, P.E., S.M. Moghaddam, A-F. Lopez-Millan, M. A. Brick, J. D. Kelly, P. N. Miklas, J. M. Osorno, T. G. Porch, C.A. Urrea, A. Soltani and M. A. Gruzak. 2017. Phenotypic diversity for seed element concentration in North American dry bean germplasm of Middle American Ancestry. Crop Sci. 57:3129-3144. doi:10.2135/cropsci2017.04.0244
- Mendoza, F.A., J.D. Kelly, and K.A. Cichy. 2017. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using a color imaging technique. International Journal of Food Properties 20:83-99. doi:10.1080/10942912.2015.1136939
- Odogwu, B.A., S. T. Nkalubo, C. Mukankusi, T. Odong, H. E. Awale, P. Rubaihayo, and J. D. Kelly. 2017. Phenotypic and genotypic screening for rust resistance in common bean germplasm in Uganda. Euphytica 213:49. doi: 10.1007/s10681-016-1795-y
- Padder, B.A., P.N. Sharma, H.E. Awale, and J.D. Kelly. 2017. Colletotrichum lindemuthianum, the causal agent of bean anthracnose. J. Plant Pathology 99: 317-330. doi: 10.4454/jpp.v99i2.3867
- Rossman, D.R., A. Rojas, J.L. Jacobs, C. Mukankusi, J.D. Kelly, and M.I. Chilvers. 2017. Pathogenicity and virulence of soilborne oomycetes on dry bean (Phaseolus vulgaris). Plant Disease101:1851-1859. doi.org/10.1094/PDIS-02-17-0178-RE
- Traub, J., J. D. Kelly, and W. Loescher. 2017. Early metabolic and photosynthetic responses to drought stress in common and tepary bean. Crop Sci. 57:1-17. doi:10.2135/cropsci2016.09.0746
- Ai, Y., K A. Cichy, J. B. Harte, J. D. Kelly, and P. K.W. Ng. 2016. Effects of extrusion cooking on the chemical composition and functional properties of dry bean powders. Food Chemistry 211:538–545. doi:10.1016/j.foodchem.2016.05.095
- Hoyos-Villegas, V., E. M. Wright and J.D. Kelly. 2016. GGE biplot analysis of yield associations with root traits in a Mesoamerican bean diversity panel. Crop Sci. 56:1081-1094. doi:10.2135/cropsci2015.10.0609
- Hoyos-Villegas, V., Q. Song, J.D. Kelly. 2016. Genomewide association analysis for drought tolerance and associated traits in common bean. The Plant Genome 9: doi:10.3835/plantgenome2015.12.0122
- Hoyos-Villegas, V., Q. Song, E.M. Wright, S. E. Beebe and J.D. Kelly. 2016. Joint linkage QTL mapping for yield and agronomic traits in a composite map of three common bean RIL populations. Crop Sci. 56:2546–2563. doi:10.2135/cropsci2016.01.0063.
- Isaacs, K.B., S.S. Snapp, J.D. Kelly and K. R. Chung. 2016. Farmer knowledge identifies competitive bean ideotype for maize-bean intercrop systems in Rwanda. Agriculture & Food Security 5:15. doi 10.1186/s40066-016-0062-8
- Kelly, J.D., G.V. Varner, S. Hooper, K.A. Cichy, and E.M. Wright. 2016. Registration of ‘Samurai’ otebo bean. J. Plant Registrations 10:109-114. doi:10.3198/jpr2015.09.0051crc.
- Mendoza, F.A, J. D. Kelly, and K. A. Cichy. 2016. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using machine vision. International Journal of Food Properties, doi:10.1080/10942912.2015.1136939.
- Moghaddam, S.M., S. Mamidi, J. M. Osorno, R. Lee, M. Brick, J. Kelly, P. Miklas, C. Urrea, Q. Song, P. Cregan, J. Grimwood, J. Schmutz, and P. E. McClean. 2016. Genome-wide association study identifies candidate loci underlying agronomic traits in a Middle American diversity panel of common bean. The Plant Genome 9: doi: 10.3835/plantgenome2016.02.0012
- Nakedde, T., F. J. Ibarra-Perez, C. Mukankusi, J. G. Waines, and J. D. Kelly. 2016. Mapping of QTL associated with Fusarium root rot resistance and root architecture traits in black beans. Euphytica 212: 51-63. doi: 10.1007/s10681-016-1755-6
- Odogwu, B.A., S. T. Nkalubo, C. Mukankusi, P. Paparu, P. Rubaihayo, J. D. Kelly, and J. Steadman. 2016. Prevalence and variability of the common bean rust in Uganda. African Journal of Agricultural Research. 11: 4990-4999. doi: 10.5897/AJAR2016.11600
- Padder, B.A., K. Kamfwa, H.E. Awale and J. D. Kelly. 2016. Transcriptome profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum pathosystem. PLoS ONE 11(11): e0165823.doi:10.1371/journal.pone.0165823.
- Zuiderveen, G.H., B. A. Padder, K. Kamfwa, Q. Song and J. D. Kelly. 2016. Genome-wide association study of anthracnose resistance in Andean beans. PLoS ONE 11(6): e0156391doi:10.1371/journal.pone.0156391
- Hoyos-Villegas, V., W. Mkwaila, P.B. Cregan and J.D. Kelly. 2015. QTL analysis of white mold avoidance in pinto bean (Phaseolus vulgaris). Crop Sci. 55:2116-2129. doi:10.2135/cropsci2015.02.0106.
- Kamfwa, K., K.A. Cichy and J.D. Kelly. 2015. Genome-wide association study of agronomic traits in common bean. The Plant Genome 8: doi:10.3835/plantgenome2014.09.0059.
- Kamfwa, K., K.A. Cichy and J.D. Kelly. 2015. Genome-wide association analysis of symbiotic nitrogen fixation in common bean. Theor. Appl. Genet. 128:1999-2017. doi. 10.1007/s00122-015-2562-5.
- Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Alpena’ navy bean. J. Plant Registrations 9:10-14. doi:10.3198/jpr2014.04.0025crc.
- Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Zenith’ black bean. J. Plant Registrations 9:15-20. doi:10.3198/jpr2014.05.0035crc.
- Kelly, J.D., J. Trapp, P.N. Miklas, K.A. Cichy, and E.M. Wright. 2015. Registration of ‘Desert Song’ Flor de Junio and ‘Gypsy Rose’ Flor de Mayo common bean cultivars J. Plant Registrations 9:133-137.
- Sousa, L.L., A. O. Gonçalves, M. C. Gonçalves-Vidigal, G. F. Lacanallo, A. C. Fernandez, H. Awale and J. D. Kelly. 2015. Genetic characterization and mapping of anthracnose resistance of Corinthiano common bean landrace cultivar. Crop Sci. 55:1900-1910. doi:10.2135/cropsci2014.09.0604.
- Burt, A.J., H. M. William, G. Perry, R. Khanal, K. P. Pauls, J. D. Kelly, A. Navabi. 2015. Candidate gene identification with SNP marker-based fine mapping of anthracnose resistance gene Co-4 in common bean. PLoS ONE 10(10): e0139450. doi:10.1371/journal.pone.0139450.
- Brisco, E.I., T.G. Porch, P.B. Cregan, and J.D. Kelly. 2014 Quantitative trait loci associated with resistance to Empoasca in common bean. Crop Sci. 54: 2509-2519. doi: 10.2135/cropsci2014.02.0159.
- Cichy, K.A., A. Fernandez, A. Kilian, J.D. Kelly, C.H. Galeano, S. Shaw, M. Brick, D. Hodkinson and E. Troxtell. 2014. QTL analysis of canning quality and color retention in black beans (Phaseolus vulgaris L.). Molecular Breeding 33:139-154. doi: 10.1007/s11032-013-9940-y.
- Kelly, J.D., G.V. Varner, K.A. Cichy, and E.M. Wright. 2014. Registration of ‘Powderhorn’ great northern bean. J. Plant Registrations 8:1-4. doi:10.3198/jpr2013.05.0020crc.
- Mendoza, F.A., K. Cichy, R. Lu and J.D. Kelly. 2014. Evaluation of canning quality traits in black beans (Phaseolus vulgaris L.) by visible/near-infrared spectroscopy. Food Bioprocess Technol. 7:2666-2678.
- Miklas, P.N., J. D. Kelly, J. R. Steadman and S. McCoy. 2014. Registration of Partial White Mold Resistant Pinto Bean Germplasm Line USPT-WM-12. J. Plant Registrations 8:183–186.
- Mukeshimana, G., L. Butare, P.B. Cregan, M. W. Blair and J. D. Kelly. 2014. Quantitative Trait Loci associated with drought tolerance in common bean. Crop Sci. 54: 923-938. doi: 10.2135/cropsci2013.06.0427.
- Mukeshimana, G., A.L. Lasley, W.H. Loescher and J.D. Kelly. 2014. Identification of shoot traits related to drought tolerance in common bean seedlings. J. Amer. Soc. Hort. Sci. 139:299–309.
- Oblessuc, P.R., R. M. Baroni, G. da Silva Pereira, A. F. Chioratto, S.A.M. Carbonell, B. Briñez, L. Da Costa E Silva, A. A. F. Garcia, L.E.A. Camargo, J. D. Kelly, and L. L. Benchimol-Reis. 2014. Quantitative analysis of race-specific resistance to Colletotrichum lindemuthianum in common bean. Molecular Breeding 34:1313-1329.
- Schmutz, J., P. McClean…J.D. Kelly... S.A. Jackson. 2014. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics.46:707-713. doi:10.1038/ng.3008. [41 authors: J.D. Kelly no. 26].
- Sousa, L.L., A. S. Cruz, P. S. Vidigal Filho, V. A. Vallejo, J. D. Kelly and M.C. Gonçalves-Vidigal. 2014. Genetic mapping of the resistance allele Co-52 to Colletotrichum lindemuthianum in the common bean MSU 7-1 line. Aust. J. Crop Science 8:317-323.
Related Work
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'Black Pearl': A New Bean Variety for Michigan (E3498)
Published on November 1, 2024
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'Kona': A New Bean Variety for Michigan (E3499)
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'Charro': A New Pinto Bean Variety for Michigan (E3494)
Published on October 2, 2024
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'Eiger': A New Great Northern Bean Variety for Michigan (E3495)
Published on October 2, 2024
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Master bean breeder readies for retirement
Published on July 1, 2020
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Moving MSU dry bean breeding forward
Published on July 1, 2020
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Taking new varieties from the lab to the field
Published on February 3, 2020
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'Zenith': A New Black Bean Variety for Michigan (E3248)
Published on October 20, 2016
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'Alpena': A New Navy Bean Variety for Michigan (E3249)
Published on October 19, 2016